PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_58.g124.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family bZIP
Protein Properties Length: 526aa    MW: 57294.5 Da    PI: 5.3071
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_58.g124.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.18.8e-09115172360
                                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                                          e kr  r+ +NRe A  sR+RKk+++ +L++ ++eL+++N++L   +++l  e + l+
  model.Picochlorum_contig_58.g124.t1 115 EEKRLARMKRNRENAHLSRLRKKEQLMNLQRSCQELKKQNSQLNLFIQRLAAENCLLR 172
                                          67999****************************************9*99999887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.1E-11110176No hitNo description
SMARTSM003381.9E-4113177IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.002115178IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-6117175No hitNo description
CDDcd147043.99E-12118168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006990Biological Processpositive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response
GO:0009408Biological Processresponse to heat
GO:0005635Cellular Componentnuclear envelope
GO:0005654Cellular Componentnucleoplasm
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016020Cellular Componentmembrane
GO:0048471Cellular Componentperinuclear region of cytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MADFELGKEP QMADLGLEAD PAFFPGLEEL PPDLLSSDLT CELDLDDLLA MFDGDEVDRD  60
MTTPTDVGTA SQTGNAATPS TSESGNRNTA GRSSSDKEDI SKETEIKDDK ERLEEEKRLA  120
RMKRNRENAH LSRLRKKEQL MNLQRSCQEL KKQNSQLNLF IQRLAAENCL LRHHLKDVCQ  180
AAKLAVPDVP TALKPSQSDA KGAPVAKCIT IPDAKGTANR SDGASGASSS QTQGAVDSAV  240
QPRNSKRKKI GGTGAAFLTL FSLFLFMSPI SIRKTDQVVS ASVGYLPEGG HSSSQQRPLL  300
TQKGRSLMMV HESSAEEASL SDYFNETVHA LLNDQGVQEL PKHALANLKD IAPAALALDK  360
ADSDIEKNTL PAATAFPALT ERIFESAGLE APQMCRKVFE FHADDVPAKN RLRSKRSIEK  420
YVMGTHGFKG RSSGLKLHPD DSAQENEEPV RLLDVPKDTD QHQEDDVLLP ARVQEPLLVS  480
LLLPANSSRS SRAGISAIDQ LYVVILNPQN TFSTYVCDLP RSLIV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00345DAPTransfer from AT3G10800Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP539288