PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_62.g343.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family NF-YB
Protein Properties Length: 138aa    MW: 15255.5 Da    PI: 5.0593
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_62.g343.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB60.34.6e-19396396
                                NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfed 78
                                         ++d +lP a +++ +k+ +P++ k++ ++ ++v  c +  i  ++s a++ ++r+kr ti+++d++ a  +lGfe 
  model.Picochlorum_contig_62.g343.t1  3 DDDLMLPKATIVKAIKERVPEDMKVGGETSDLVVSCCTTLIHVLSSTANEISERNKRATIQPEDVVQAAKELGFES 78
                                         67899*********************************************************************** PP

                                NF-YB 79 yveplkvylkkyrelege 96
                                         y+  l++ l +++  ++e
  model.Picochlorum_contig_62.g343.t1 79 YIPVLEKALDEWKSEKKE 96
                                         *******99999876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-343133IPR009072Histone-fold
SuperFamilySSF471131.16E-284134IPR009072Histone-fold
PfamPF008082.9E-11870IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MFDDDLMLPK ATIVKAIKER VPEDMKVGGE TSDLVVSCCT TLIHVLSSTA NEISERNKRA  60
TIQPEDVVQA AKELGFESYI PVLEKALDEW KSEKKEAKNL KNKKAASLNG MSQEELIKMQ  120
QQLFQQAKDK AQGGAME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-28312811133Transcription Regulator NC2 beta chain
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP24221515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-20nuclear factor Y, subunit B13