PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_83.g427.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family NF-YB
Protein Properties Length: 220aa    MW: 25000.9 Da    PI: 3.7892
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_83.g427.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB28.92.7e-091231922695
                                NF-YB  26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                                          ++ kd+    +  +  fi ++t+ a+d c + kr+t+  +d++  l +  f ++vepl++++  ++e ++
  model.Picochlorum_contig_83.g427.t1 123 QVNKDSLVAFDVAAKLFIHYLTCAANDLCIEAKRQTLGVQDVFQGLEDTEFGEFVEPLRAHFVAFKESKK 192
                                          4556666666667788*************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001253.9E-838164IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:1.10.20.106.9E-2481202IPR009072Histone-fold
SuperFamilySSF471131.69E-1990201IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEDDRPEQPG VVGGDIEDIA VGVGEEPMEQ PEEEPQQEEE EEPQQEEEEE PQQEEEEEPQ  60
QEEEEEPQQE EEDEQQEGED EQQQQQQQEE DISFPKSLLK RLVKEQMDQE VCKSKEGAVV  120
DVQVNKDSLV AFDVAAKLFI HYLTCAANDL CIEAKRQTLG VQDVFQGLED TEFGEFVEPL  180
RAHFVAFKES KKKGKRKSED VGVPDDVHKS PKTDNDGAE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005648182.17e-27hypothetical protein COCSUDRAFT_63166
TrEMBLI0YZ192e-25I0YZ19_COCSC; Uncharacterized protein
STRINGXP_005648182.13e-26(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34531313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-20nuclear factor Y, subunit B11