PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_84.g402.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB_related
Protein Properties Length: 215aa    MW: 24572.8 Da    PI: 10.4111
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_84.g402.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-14132176347
                                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                          +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  model.Picochlorum_contig_84.g402.t1 132 PWTEEEHRLFLMGLAKYGKGDWRSISRNFVITRTPTQVASHAQKY 176
                                          7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.9143892IPR017884SANT domain
SMARTSM007170.823990IPR001005SANT/Myb domain
SuperFamilySSF466897.59E-64094IPR009057Homeodomain-like
CDDcd001670.001674387No hitNo description
PROSITE profilePS5129418.835125181IPR017930Myb domain
SuperFamilySSF466892.9E-17126182IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-17129179IPR006447Myb domain, plants
SMARTSM007175.1E-12129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-12130175IPR009057Homeodomain-like
PfamPF002496.5E-13132176IPR001005SANT/Myb domain
CDDcd001672.25E-10132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVSGTRSAGN GTKQQQQKKD AHDGSHAKLA EGKADHAVAK GGWSEEEDRV FENSLAQYWD  60
FPDRFEKCAS MLSRKNLTDV IARFKELDED IRNIEMGRVQ MPAYPVPGEA LSISQLQKKV  120
KSQDTERRKG IPWTEEEHRL FLMGLAKYGK GDWRSISRNF VITRTPTQVA SHAQKYFIRL  180
NSQNKKDKRR ASIHDITSVH PEYKKKPKKS TKKE*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00568DAPTransfer from AT5G58900Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005844178.11e-87expressed protein
SwissprotQ8S9H71e-51DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLE1ZQ143e-86E1ZQ14_CHLVA; Expressed protein
STRINGXP_005844178.15e-87(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.19e-57Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]