PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_84.g406.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family AP2
Protein Properties Length: 324aa    MW: 36484.2 Da    PI: 4.9674
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_84.g406.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-112271155
                                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         s+y+GV+ + +++r++++I+d       k+ +lg f  + +Aa a++ a+ +l+g
  model.Picochlorum_contig_84.g406.t1 22 SKYRGVTHHARTNRYESHIWDE-----GKQLYLGGFYNELQAALAYDLAATRLRG 71
                                         89*******************5.....4**********99*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-52271IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-132280IPR016177DNA-binding domain
CDDcd000183.26E-152279No hitNo description
PROSITE profilePS5103214.8682379IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-132379IPR001471AP2/ERF domain
SMARTSM003802.7E-182385IPR001471AP2/ERF domain
PROSITE profilePS510328.887108170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-4129170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MVSDSIKSRR TERRGGSSKL GSKYRGVTHH ARTNRYESHI WDEGKQLYLG GFYNELQAAL  60
AYDLAATRLR GDEAILNFDR NTCSAELAER FSVTPEQVIM CLRQQSKDMN KVNQSRDYTT  120
DEWELHMSHV INPLKQHIGV YASEVEAAQA YDRAMIRCIG LEAAPLINFQ LLDYLDMLSA  180
DQISEAMQRG LVPSVIPQTF SPTSPPTPIY TVESNLAQQN HGMNDSKDEK EQQVSHQANS  240
ADTLSPMDSP DPCGHAVRRR SSNTPRSVLD SKDDDEDGDA DHEVGVKRQQ REDDDEEELS  300
PHCQRKSKRL QRESPSDEQD VSS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZLZ85e-52A0A1D1ZLZ8_AUXPR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-26AP2 family protein