PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_96.g488.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family bZIP
Protein Properties Length: 331aa    MW: 36645 Da    PI: 6.5149
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_96.g488.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.31.6e-08261319563
                                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                          k++rr   NR++A +s  R k  ie+L+ k+++Le++ k+L +e+ +lk++++  k+e+
  model.Picochlorum_contig_96.g488.t1 261 KKARRILANRLSAAKSKMRQKSAIENLKAKMQALESKKKSLMEEIASLKEKCEIEKAEN 319
                                          89**************************************************9777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-8253313No hitNo description
SMARTSM003389.0E-8257321IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.967259322IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-8261313No hitNo description
PfamPF001702.0E-6261319IPR004827Basic-leucine zipper domain
CDDcd147033.40E-13262313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGEQREDASL GGAELYTSGK DEMFRPSESI PVPVDAFRST DHHSTHTILD ACDGDGLIIS  60
PKDPSTFFLD DDGGDLLDGL GPNFDTDIAL LGMNNQSNGD FLKEREYSGG FPPIPEHSEL  120
GGMMHHMDER PLQGHVEFSQ EQFAMAHNVI PQHNFQKDDF GVRYTSGTSK RENAGVHKVA  180
SMPNFSLHQQ GQGAQQDVAQ TEDVARPRLP PKSYSTNDLS SLAQKYDVPH SHFLTAPHLR  240
KGKGGRQPAM DPRMDPNIDP KKARRILANR LSAAKSKMRQ KSAIENLKAK MQALESKKKS  300
LMEEIASLKE KCEIEKAENT KLREALQNRT *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00129DAPTransfer from AT1G06850Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP581722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.15e-10basic leucine-zipper 52