PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00951.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 478aa    MW: 54635.1 Da    PI: 6.0126
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00951.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.41.3e-40221491128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                              lppG+rF+Ptd+el+ +yLk+k+ +++l+  + i+e +iy+++P++L +k+k+ +e+ wyfFs+r++ky++g+r+nr++++gyWka
  mrna00951.1-v1.0-hybrid  22 LPPGYRFNPTDQELILYYLKPKILNQPLPR-NRIHERNIYQFHPRKLSEKFKKiREDGWYFFSTRKRKYQNGRRPNRKADDGYWKA 106
                              79**************************99.77**************9655543788***************************** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              tg+  +++ ++ge++g kk+L + kg +p   ktdW m ey+l
  mrna00951.1-v1.0-hybrid 107 TGSGIDIKGENGEVIGHKKVLDYKKGAHPLNIKTDWKMLEYKL 149
                              *****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-4920179IPR003441NAC domain
PROSITE profilePS5100546.29722180IPR003441NAC domain
PfamPF023651.4E-2123149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEGNNQENNE EATTTDEYFR SLPPGYRFNP TDQELILYYL KPKILNQPLP RNRIHERNIY  60
QFHPRKLSEK FKKIREDGWY FFSTRKRKYQ NGRRPNRKAD DGYWKATGSG IDIKGENGEV  120
IGHKKVLDYK KGAHPLNIKT DWKMLEYKLK DEDEDNPLPK RKKGEGNMKL DLVLCKVYLN  180
TRANGNTNNN GAITTEISDQ EMVTDSGTSH YRETVLKQEA DQVQPLDSSL MSSLQRQVHS  240
NTTGAFNHMD HISTSSTIPE TCFHSSNPMN NGVMVTDTVT SHRRHNNLVP KQEAGQVAPL  300
DSSLVYSPQP QVHNNTTGGF NHLNHISNSS SSTSMSNGVY DSTNCTHYGE PMHNGSSGSV  360
YQWGSSFTQL HHQNYYMYPE QMPSSSTSYT SEHPLQYLST EIWTQLQPEN HEMSRLDDST  420
FVSLPPHVRE YNSMLVNIKD EAEMMPFKHE ADDDDDDDGL QFLSIPDEVH EDDPKTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-302117816163NO APICAL MERISTEM PROTEIN
1ut4_B2e-302117816163NO APICAL MERISTEM PROTEIN
1ut7_A2e-302117816163NO APICAL MERISTEM PROTEIN
1ut7_B2e-302117816163NO APICAL MERISTEM PROTEIN
4dul_A2e-302117816163NAC domain-containing protein 19
4dul_B2e-302117816163NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00951.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467999.10.0PREDICTED: NAC domain-containing protein 19-like
TrEMBLA0A2P6RBA21e-141A0A2P6RBA2_ROSCH; Putative transcription factor NAM family
STRINGXP_004306167.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3240422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.17e-41NAC-like, activated by AP3/PI