PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01015.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 582aa    MW: 64797.6 Da    PI: 4.7399
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01015.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.85.8e-1362125812374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++lL++cA a+s+g+ e+a++++++l++l+s +gdp qR+aay++e+Laar+a+s++ ly+al+++e +   ss +laa+++++ev
  mrna01015.1-v1.0-hybrid 212 KQLLFDCASALSEGNIEEASTMINELRQLVSIQGDPHQRIAAYMVEGLAARMASSGKFLYRALKCKEPP---SSYRLAAMQVLFEV 294
                              589*****************************************************************9...9************* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              +P++kf++++aN aI ea++ ++rvHiiDfdi+qG Q+++L+q+La+ p++p +lR+Tg+++pes+      l+++g+rL+++Ae 
  mrna01015.1-v1.0-hybrid 295 CPCFKFGFMAANGAIIEATKDDKRVHIIDFDINQGNQYITLIQTLAQLPGKPLHLRLTGIDDPESVqrPVGGLNTIGQRLEQLAEG 380
                              ****************************************************************99888899************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              lgv+fef++ va++++ +++++L+++pgEal+Vn+++qlh+++desvs+ ++rd++L+l ksl+Pk+v+vveq++++n+++F+ rf
  mrna01015.1-v1.0-hybrid 381 LGVSFEFQA-VASKTSIVSPSMLDCRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRLAKSLRPKLVTVVEQDVNTNTTPFFPRF 465
                              *********.7*************************************************************************** PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                              +ea +yysa+fdslea +pres++r++vE+++l+r+ivn+vaceg+er+er e ++kWr+r+ +aGF++ p+s+++++ ++ l+r+
  mrna01015.1-v1.0-hybrid 466 VEAYNYYSAVFDSLEAAIPRESQDRMNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMAMAGFTSSPMSTSVTDLIRELIRM 551
                              ************************************************************************************** PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + ++ y+++ee g+l +gW+d++L+++SaWr
  mrna01015.1-v1.0-hybrid 552 YCDR-YKIKEEMGALHFGWEDKTLIVASAWR 581
                              **66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.59185562IPR005202Transcription factor GRAS
PfamPF035142.0E-133212581IPR005202Transcription factor GRAS
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MSLVRPVELS ATSYRKSKLY SLKGSNDTST QTFGADKSNT MYTTDSYSTE SYEFLDSPSE  60
EVAHPSSSSI TGSSFNEHGA SFYPRRAGSV SSFTTQNPSS TSMSTRLHDA YRTNIDSDYL  120
ESQSPDAVSF DDDKMRLKLQ ELERALLEDN DDEHDEEMIG SGQSMEIDGE WTEPIQNALL  180
HDSPKESSSS DSYLSSISSN KEISGTSLRT PKQLLFDCAS ALSEGNIEEA STMINELRQL  240
VSIQGDPHQR IAAYMVEGLA ARMASSGKFL YRALKCKEPP SSYRLAAMQV LFEVCPCFKF  300
GFMAANGAII EATKDDKRVH IIDFDINQGN QYITLIQTLA QLPGKPLHLR LTGIDDPESV  360
QRPVGGLNTI GQRLEQLAEG LGVSFEFQAV ASKTSIVSPS MLDCRPGEAL VVNFAFQLHH  420
MPDESVSTVN QRDQLLRLAK SLRPKLVTVV EQDVNTNTTP FFPRFVEAYN YYSAVFDSLE  480
AAIPRESQDR MNVEKQCLAR DIVNIVACEG EERIERYEVA GKWRARMAMA GFTSSPMSTS  540
VTDLIRELIR MYCDRYKIKE EMGALHFGWE DKTLIVASAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6521858026378Protein SCARECROW
5b3h_A2e-6521858025377Protein SCARECROW
5b3h_D2e-6521858025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01015.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458547.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2P6PSL60.0A0A2P6PSL6_ROSCH; Putative transcription factor GRAS family
STRINGXP_004290577.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]