PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01068.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 190aa    MW: 21579.4 Da    PI: 7.5528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01068.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.4e-05791181054
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              + R +++ +++  L++l+ +      +K + a++L +A++YI+ L
  mrna01068.1-v1.0-hybrid  79 KERKEKLGERIVALQQLVSPY-----GKTDTASVLLEAMDYIRFL 118
                              6788889999999****9999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.4E-1068138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.65569118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1271131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-475124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-579123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MNHYAEEPSE YPAERTETVK RDDKHTVMLY WNWEMFQGEE GIDVRKMTEH KRNPCSVEQS  60
SRTALTSKRH KTDLSMSTKE RKEKLGERIV ALQQLVSPYG KTDTASVLLE AMDYIRFLHE  120
QVKVLSAPYL QSTPTAKMQE LQSFSLRSRG LCLVPIDCTV GVAQSNGADI WAPIKTTSAK  180
FENVNSNSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01068.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309594.11e-111PREDICTED: transcription factor bHLH113
SwissprotQ7XJU25e-64BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2P6QU781e-100A0A2P6QU78_ROSCH; Putative transcription factor bHLH family
STRINGXP_004309594.11e-111(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-66bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]