PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01184.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 455aa    MW: 51253.3 Da    PI: 6.8823
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01184.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.75.5e-118584532373
                     GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar...svselykalppsetsekn......ssee 77 
                              ++lL++cAe +s+ d++ a+ l++ l     sp+gd+++Rl++ f++AL+ rl       + +++  +++ ts  +          
  mrna01184.1-v1.0-hybrid  58 RQLLIRCAELISQLDFSSAHGLISILASSnYSPHGDSTERLVHQFVRALSLRLPPvaaAPPDMARVAAATGTSAAStssalsL--- 140
                              79************************88769*********************9872212233333332222222221223330... PP

                     GRAS  78 laal..............klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....egppslR 143
                                                 ++++++P+++fshltaNqaIlea++++ +++Hi+Dfdi++G+QWp+L+qaL +R+     ++pp lR
  mrna01184.1-v1.0-hybrid 141 ---EveteaeeetlqscyLTLNQITPFIRFSHLTANQAILEAIDSShHAIHILDFDIKHGVQWPPLMQALVERSygsssSPPPLLR 223
                              ...15555556555554344************************998999************************877767799*** PP

                     GRAS 144 iTgvgspesgskeeleetgerLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                              iT+ g+    + + l++tgerL +fA++lg++f+f+++     +  ++ l++ +L + p+EalaVn+vl lhrll +++   +   
  mrna01184.1-v1.0-hybrid 224 ITATGR----DLTLLRRTGERLLRFAQSLGLTFHFRPIvllnDVAMIDYLNPASLGLFPNEALAVNCVLYLHRLLTDDARDLH--- 302
                              ******....9**************************9654434468889*************************77666666... PP

                     GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerh 309
                               +L+ ++ l+Pk+v+v+e+ea+hns+ Fl+rf+ea+++y a+f slea+lp++s+er  vE++++grei +vva+  ++  ++ rh
  mrna01184.1-v1.0-hybrid 303 LFLDKIRALNPKIVTVAEREANHNSPMFLNRFVEAVDHYGAVFGSLEATLPPNSRERLAVEQMWFGREIADVVAADDDQgrKQLRH 388
                              9*************************************************************************9988764567** PP

                     GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                              e++e+W+++++++GF++vpls +a +qaklllr ++ s+gy++++ ++s++lgW++rpL+svS+W
  mrna01184.1-v1.0-hybrid 389 ERYENWEMMMRRSGFSNVPLSPFALSQAKLLLRLHYpSEGYQLHSLKDSFFLGWMNRPLFSVSSW 453
                              ***************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.11631433IPR005202Transcription factor GRAS
PfamPF035141.9E-11558453IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGSFNSSHHQ RIVPQQQEDQ DHPQIHADLQ LYNQHHRHHP QYQIPQPPLL MSRGLTARQL  60
LIRCAELISQ LDFSSAHGLI SILASSNYSP HGDSTERLVH QFVRALSLRL PPVAAAPPDM  120
ARVAAATGTS AASTSSALSL EVETEAEEET LQSCYLTLNQ ITPFIRFSHL TANQAILEAI  180
DSSHHAIHIL DFDIKHGVQW PPLMQALVER SYGSSSSPPP LLRITATGRD LTLLRRTGER  240
LLRFAQSLGL TFHFRPIVLL NDVAMIDYLN PASLGLFPNE ALAVNCVLYL HRLLTDDARD  300
LHLFLDKIRA LNPKIVTVAE REANHNSPMF LNRFVEAVDH YGAVFGSLEA TLPPNSRERL  360
AVEQMWFGRE IADVVAADDD QGRKQLRHER YENWEMMMRR SGFSNVPLSP FALSQAKLLL  420
RLHYPSEGYQ LHSLKDSFFL GWMNRPLFSV SSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-57594536374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01184.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296106.20.0PREDICTED: scarecrow-like protein 18 isoform X1
SwissprotQ9ZWC51e-132SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A2P6QL500.0A0A2P6QL50_ROSCH; Putative transcription factor GRAS family
STRINGXP_004296106.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-116GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]