PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01336.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14439.8 Da    PI: 8.6218
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01336.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.4e-29959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krie+k++rqvtfskRr g++KKA ELSvLC++ev +iifs +g+lye++s
  mrna01336.1-v1.0-hybrid  9 KRIEDKIRRQVTFSKRRSGLMKKARELSVLCGVEVGLIIFSAKGRLYEFCS 59
                             79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.796161IPR002100Transcription factor, MADS-box
CDDcd002652.92E-36261No hitNo description
SuperFamilySSF554551.18E-28275IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGRGKVQLKR IEDKIRRQVT FSKRRSGLMK KARELSVLCG VEVGLIIFSA KGRLYEFCSG  60
DRYAAPKSYW KVFMCCAYKM PAEKFTTFEL ANAREIVNDF MPSSMEDDVL KEDSMVFENE  120
EEAII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-19161161Myocyte-specific enhancer factor 2B
1tqe_Q8e-19161161Myocyte-specific enhancer factor 2B
1tqe_R8e-19161161Myocyte-specific enhancer factor 2B
1tqe_S8e-19161161Myocyte-specific enhancer factor 2B
6c9l_A8e-19161161Myocyte-specific enhancer factor 2B
6c9l_B8e-19161161Myocyte-specific enhancer factor 2B
6c9l_C8e-19161161Myocyte-specific enhancer factor 2B
6c9l_D8e-19161161Myocyte-specific enhancer factor 2B
6c9l_E8e-19161161Myocyte-specific enhancer factor 2B
6c9l_F8e-19161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01336.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2433708e-54KM243370.1 Prunus pseudocerasus CAULIFLOWER A-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306305.12e-36PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ034891e-25AGL9_PETHY; Agamous-like MADS-box protein AGL9 homolog
TrEMBLA0A2P6S6L45e-38A0A2P6S6L4_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004306305.19e-36(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-27MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG,Gadella TW,Ferrario S,Busscher M,Angenent GC
    Analysis of MADS box protein-protein interactions in living plant cells.
    Proc. Natl. Acad. Sci. U.S.A., 2002. 99(4): p. 2416-21
    [PMID:11854533]
  2. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  3. Angenent GC,Busscher M,Franken J,Mol JN,van Tunen AJ
    Differential expression of two MADS box genes in wild-type and mutant petunia flowers.
    Plant Cell, 1992. 4(8): p. 983-93
    [PMID:1356537]
  4. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]