PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01364.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 226aa    MW: 25553.1 Da    PI: 10.347
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01364.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.84.1e-27121751128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkya...tgkrknra..tk 79 
                              lp+G+rF+Ptdeelvv+yLk+kv+g +l++ ++i++   + y ++P++Lp+ + ++ ++ yfF +++ +y+   + ++ +ra  + 
  mrna01364.1-v1.0-hybrid  12 LPVGYRFDPTDEELVVYYLKRKVHGLPLPA-SIIPDYnsNYYLAHPSHLPMPLGKTMQKRYFFYNSKDNYQsdnNRSNYKRAaaAG 96 
                              799***************************.7899884456777******766666667788877777777333233445542255 PP

                      NAM  80 sgyWkatgkdkevlsk........kgel......vglkktLvfy..................kgrapkgektdWvmheyrl 128
                               g+W++ gk+k+++++        +  +        ++ktLvf+                  +++ + +++ +W+mhey+l
  mrna01364.1-v1.0-hybrid  97 CGFWRSIGKEKQIVDTtcsdqcacS--QaqlaavLAVRKTLVFFgshgrkkktthhhryryqHQNGSLSTSPRWFMHEYHL 175
                              899***********98766555541..056677799********88777766666655533212333334778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-3011193IPR003441NAC domain
PROSITE profilePS5100532.23612193IPR003441NAC domain
PfamPF023651.3E-1913175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNGGGGGGAK MLPVGYRFDP TDEELVVYYL KRKVHGLPLP ASIIPDYNSN YYLAHPSHLP  60
MPLGKTMQKR YFFYNSKDNY QSDNNRSNYK RAAAAGCGFW RSIGKEKQIV DTTCSDQCAC  120
SQAQLAAVLA VRKTLVFFGS HGRKKKTTHH HRYRYQHQNG SLSTSPRWFM HEYHLRGSEV  180
LGNNWVLCSV FQKRRKLTSK KRGRTSALDN IGSCGHLPKP SNMFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-141219417166NO APICAL MERISTEM PROTEIN
1ut4_B6e-141219417166NO APICAL MERISTEM PROTEIN
1ut7_A6e-141219417166NO APICAL MERISTEM PROTEIN
1ut7_B6e-141219417166NO APICAL MERISTEM PROTEIN
3swm_A7e-141219420169NAC domain-containing protein 19
3swm_B7e-141219420169NAC domain-containing protein 19
3swm_C7e-141219420169NAC domain-containing protein 19
3swm_D7e-141219420169NAC domain-containing protein 19
3swp_A7e-141219420169NAC domain-containing protein 19
3swp_B7e-141219420169NAC domain-containing protein 19
3swp_C7e-141219420169NAC domain-containing protein 19
3swp_D7e-141219420169NAC domain-containing protein 19
4dul_A6e-141219417166NAC domain-containing protein 19
4dul_B6e-141219417166NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01364.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306314.11e-171PREDICTED: protein SOMBRERO-like
TrEMBLA0A2P6S6J81e-114A0A2P6S6J8_ROSCH; Putative transcription factor NAM family
STRINGXP_004306314.11e-170(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.23e-27NAC domain containing protein 41