PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01536.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 222aa    MW: 24528.6 Da    PI: 9.8979
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01536.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.81.3e-1633107179
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevt 79 
                              kfYn+YAk++GFs+r +++ +sk+ +   ++++vC+k+g+++ e +k     r+r   ++gC+a++ v ++k +g+++v+
  mrna01536.1-v1.0-hybrid  33 KFYNRYAKDAGFSTRSHTTATSKDGTLLLRKEYVCYKQGNSKVEGEK-----RKRGLPKVGCDARIAVVRKKeSGRYVVS 107
                              6***************************************9998877.....999***********98888769999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-1433107IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MESEDDQVYI PQVKIELKPR LHQEFETVDD VAKFYNRYAK DAGFSTRSHT TATSKDGTLL  60
LRKEYVCYKQ GNSKVEGEKR KRGLPKVGCD ARIAVVRKKE SGRYVVSVGQ NAIVLGAKSG  120
SIQHTFNEPN QVRAKGCGRR LKKGKEKKKV KVKDNQGRQC HGCGLFGQSH DKRNCPTLHG  180
KHVVNKDGDS SSSSMQDGDS SSTSMQDEDG CSSPGKFRCI E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01536.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.16e-11FAR1-related sequence 11