PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna02232.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 376aa MW: 41456.3 Da PI: 5.4611

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna02232.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	55.5	1.1e-17	217	300	1	82
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalk 82 l++lL++cAeav+ +d a++lL+++++++sp gd +qRla++f++AL+arla+++++ly + ++ s+k+ ++ ++++ mrna02232.1-v1.0-hybrid 217 LRRLLISCAEAVAVDDRGTASELLKQIRQHSSPFGDYTQRLAHCFANALEARLAGTGTQLYTTWIHTTLSTKRvsGADISKFYR 300 689**********************************************************99855555544433444445554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	11.915	191	375	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-15	217	300	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MEEDMEPKPC MFHDPLVLQA TEESLYEVIG GGKCSTSQDQ NPHWVDQNEY GNGNVMVGSY 60 RSELMVPDAV SKNELLVQFD RGAEDGCKFL PRGQLITAEG NKTYAVANSK AGNVIVTTQK 120 NGSEHVHVGS RGKTSHQREE IDLEDGKINK QSAVYMDDVE GELSDSFGKA LLSCKAVESN 180 EDQVCQNGAN NGLQQDVLVS QKACGMKRGN KKEVIDLRRL LISCAEAVAV DDRGTASELL 240 KQIRQHSSPF GDYTQRLAHC FANALEARLA GTGTQLYTTW IHTTLSTKRV SGADISKFYR 300 AYIARGIDPI SEMTSTLDAT WMEDMDGRAD LKSGQGGGLD MFERNRSHIR NDFHTGCYMD 360 GRADLAQPML RRGWR*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MEEDMEPKPC MFHDPLVLQA TEESLYEVIG GGKCSTSQDQ NPHWVDQNEY GNGNVMVGSY  60
RSELMVPDAV SKNELLVQFD RGAEDGCKFL PRGQLITAEG NKTYAVANSK AGNVIVTTQK  120
NGSEHVHVGS RGKTSHQREE IDLEDGKINK QSAVYMDDVE GELSDSFGKA LLSCKAVESN  180
EDQVCQNGAN NGLQQDVLVS QKACGMKRGN KKEVIDLRRL LISCAEAVAV DDRGTASELL  240
KQIRQHSSPF GDYTQRLAHC FANALEARLA GTGTQLYTTW IHTTLSTKRV SGADISKFYR  300
AYIARGIDPI SEMTSTLDAT WMEDMDGRAD LKSGQGGGLD MFERNRSHIR NDFHTGCYMD  360
GRADLAQPML RRGWR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna02232.1-v1.0-hybrid

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294644.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A0A2P6QIZ9	1e-149	A0A2P6QIZ9_ROSCH; Putative transcription factor GRAS family
STRING	XP_004294644.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	8e-44	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	mrna02232.1-v1.0-hybrid