PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02234.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 482aa    MW: 53090.8 Da    PI: 8.3892
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02234.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.22.1e-25141243199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d++g +W++++iyr++++r++lt+GW++Fv+++ L +gD+
  mrna02234.1-v1.0-hybrid 141 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLSVTDLHGVVWDFRHIYRGTPRRHLLTTGWSKFVNSKMLVAGDS 224
                              89*********************999****985444444..9******************************************** PP

                              EEEEE-SS.SEE..EEEEE-S CS
                       B3  80 vvFkldgr.sefelvvkvfrk 99 
                              vvF++  +  ++e++v+v+r+
  mrna02234.1-v1.0-hybrid 225 VVFMR--NsGGGEMYVGVRRT 243
                              ****5..44999******996 PP
2Auxin_resp92.47.4e-31286369183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              aa+ a+++++FevvY+P+a++++Fvvk+e vekal+v +++GmR+kma+et+dss+ ++ +Gt ++v   ++  W++S+Wr+L+
  mrna02234.1-v1.0-hybrid 286 AAEMAAQEMPFEVVYYPKAGWADFVVKAEVVEKALNVFWTAGMRVKMAMETDDSSRMTWfQGTLSSVFVPESGPWKGSPWRMLQ 369
                              68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-35131247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-30135262IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-22140242No hitNo description
SMARTSM010193.2E-20141244IPR003340B3 DNA binding domain
PROSITE profilePS5086312.816141244IPR003340B3 DNA binding domain
PfamPF023625.9E-23141243IPR003340B3 DNA binding domain
PfamPF065077.7E-28286369IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MSPTSQRHTR SRSHSHSHAP PQPQPQPQLV SIDPKIWRAC AGNSITIPTL HSRVYYFPQG  60
HLEHSTSASS PVLLSPQVLS RPLILCRVAA VKFLADPTTD EVFAKLLLHP VHPGLSPHHR  120
ELSAAATEEV ESENDDRVVS FAKILTPSDA NNGGGFSVPR FCADSIFPPL NYQAEPPVQT  180
LSVTDLHGVV WDFRHIYRGT PRRHLLTTGW SKFVNSKMLV AGDSVVFMRN SGGGEMYVGV  240
RRTVRASHGG DCARWSSHIG LKSSSEEGSG GDGFKTKLSA EAVVEAAEMA AQEMPFEVVY  300
YPKAGWADFV VKAEVVEKAL NVFWTAGMRV KMAMETDDSS RMTWFQGTLS SVFVPESGPW  360
KGSPWRMLQV TWDEPEVLQN AKRVSPWQVD FVASTPSLHP APPFHTVYPL TKRFRAPLNP  420
ALLRHGEEEF MIPMTGAANS TMGQEPGKIY SVIPMRLICL MKVLLGCAPI IPLATTTWRQ  480
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-673239051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02234.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465821.10.0PREDICTED: auxin response factor 17, partial
SwissprotQ84WU61e-147ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2P6PI060.0A0A2P6PI06_ROSCH; Auxin response factor
STRINGXP_004301788.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-138auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]