PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna02297.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 207aa MW: 23458.3 Da PI: 5.3683

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna02297.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.3	4.4e-22	116	201	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Y+eY+ ++GFsv ++k +k+ n+ + + +++Cskeg++ +++ + e ++++r etrtgC ak++ +++++ w+vt ++ eHnH mrna02297.1-v1.0-hybrid 116 LYCEYGVRIGFSVWIDKRRKT--NNVVRQVNYCCSKEGFKLDSDPS-EVNKTHRLETRTGCPAKIRFGLQENNLWKVTLFVPEHNH 198 7*************98888..889************9999.99999******************************** PP FAR1 88 ela 90 la mrna02297.1-v1.0-hybrid 199 RLA 201 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-19	116	201	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSLRVHKHGI FGVRLSNPSL ALSDSDEWNR GKMRAGTAAI SAAVTDWEWV FGVSAAVIIQ 60 KFFSPAGEPL IDIEDDEEDI MTSDLEKHPM IVNRQASNDE NLFGVTVNSE EEAYNLYCEY 120 GVRIGFSVWI DKRRKTNNVV RQVNYCCSKE GFKLDSDPSE VNKTHRLETR TGCPAKIRFG 180 LQENNLWKVT LFVPEHNHRL ADPEER*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna02297.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011463236.1	1e-87	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A251QFY5	1e-38	A0A251QFY5_PRUPE; Uncharacterized protein
STRING	XP_004292735.1	8e-72	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3607	9	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-14	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna02297.1-v1.0-hybrid