PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna02402.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LSD

Protein Properties

Length: 126aa MW: 13684.5 Da PI: 5.5113

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna02402.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.8	8.4e-14	36	60	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP+GA++V+C++C+tV mrna02402.1-v1.0-hybrid 36 CGSCRRLLTYPPGAKHVQCSCCQTV 60 ************************9 PP
2	zf-LSD1	45.3	1.4e-14	74	98	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C tlL+YP+GApsVRC++C +V mrna02402.1-v1.0-hybrid 74 CDSCTTLLMYPYGAPSVRCSSCSFV 98 **********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.0E-18	33	63	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.5E-12	36	60	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	5.9E-12	71	99	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.5E-12	74	98	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
METEEQQVDE APPQETQPVV SQPPPPPISE IAQMVCGSCR RLLTYPPGAK HVQCSCCQTV 60 NFVLEAHQVG QVKCDSCTTL LMYPYGAPSV RCSSCSFVTE VKDHNMRPPW SVQQGQPTAP 120 SNSVH*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna02402.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294024.2	2e-87	PREDICTED: protein LOL2
Swissprot	O65426	6e-42	LOL2_ARATH; Protein LOL2
TrEMBL	A0A2P6Q408	2e-71	A0A2P6Q408_ROSCH; Putative transcription factor Znf-LSD family
STRING	XP_004294024.1	1e-86	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	4e-43	lsd one like 2

Link Out ? help Back to Top
Phytozome	mrna02402.1-v1.0-hybrid