PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02509.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 364aa    MW: 41187.8 Da    PI: 9.216
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02509.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.6e-15991190
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                             ffkvl     + s++l++p+ f++++ g++++      l+ + g+ W v+l  +  ++r v+ +GW++F+k + L+ gDf++F+ldg+
  mrna02509.1-v1.0-hybrid  9 FFKVL--VGDF-SQQLCIPRAFVKNFnGHVPR---FCGLRGPCGNLWAVNL--KVIRNRLVFHDGWQSFAKHHFLEIGDFLTFTLDGE 88
                             56666..3444.456********888666654...4899************..999999**************************998 PP

                             SEE CS
                       B3 88 sef 90
                             s f
  mrna02509.1-v1.0-hybrid 89 SIF 91
                             777 PP
2B3382.9e-12152239295
                              EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              fk++ + + l+ + l +p + +++ g+   ++kt++l+d+sg+ W++kl  + + ++ +  k W + +++n++  gD+++++++++
  mrna02509.1-v1.0-hybrid 152 FKTTFTRS-LRYN-LKIPARVVKAAGLM--SNKTIMLQDPSGKPWSIKL--TETTRGQLRMKDWYKCCEENQISYGDTLIIEVVKH 231
                              55554433.3333.99******999888..6679***************..88888877778********************9999 PP

                              SEE..EEE CS
                       B3  88 sefelvvk 95 
                              s f+l+v+
  mrna02509.1-v1.0-hybrid 232 SVFQLHVH 239
                              ***99997 PP
3B343.74.8e-14264350194
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffk++ + ++   + l++p++ +++ g     skt++l+d+  r+W++kl ++ + gr  ++ GW + +++n++ +gD++v+++++
  mrna02509.1-v1.0-hybrid 264 FFKTMFKRSMR-YD-LIIPNRIVRAAGP---ISKTIVLKDPAERQWSIKL-HETTMGRLRME-GWGKCCEENQISTGDTIVIEVVK 342
                              77877554444.44.9*******88873...689****************.56666777777.********************999 PP

                              SSEE..EE CS
                       B3  87 rsefelvv 94 
                              +s f+l+v
  mrna02509.1-v1.0-hybrid 343 HSVFQLHV 350
                              99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.71E-235101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-215100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.52699IPR003340B3 DNA binding domain
CDDcd100175.21E-18796No hitNo description
PfamPF023621.8E-12991IPR003340B3 DNA binding domain
SMARTSM010194.9E-13999IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-15145240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-14146240IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.278149242IPR003340B3 DNA binding domain
PfamPF023628.7E-10151239IPR003340B3 DNA binding domain
SMARTSM010192.8E-10151244IPR003340B3 DNA binding domain
CDDcd100171.96E-6151240No hitNo description
SuperFamilySSF1019366.08E-13259353IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.447262354IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-14263353IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-12264350IPR003340B3 DNA binding domain
SMARTSM010191.9E-9264354IPR003340B3 DNA binding domain
CDDcd100173.44E-11264352No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MELEDRPSFF KVLVGDFSQQ LCIPRAFVKN FNGHVPRFCG LRGPCGNLWA VNLKVIRNRL  60
VFHDGWQSFA KHHFLEIGDF LTFTLDGESI FDVIIYGKSY CEKNIEAAKN MIGDVVDRTI  120
NTDIILGKRL APDLVEETSI GPISSNPANL FFKTTFTRSL RYNLKIPARV VKAAGLMSNK  180
TIMLQDPSGK PWSIKLTETT RGQLRMKDWY KCCEENQISY GDTLIIEVVK HSVFQLHVHK  240
VGAALDVVEE TSMVPFSINP ANPFFKTMFK RSMRYDLIIP NRIVRAAGPI SKTIVLKDPA  300
ERQWSIKLHE TTMGRLRMEG WGKCCEENQI STGDTIVIEV VKHSVFQLHV YKAGATLDVK  360
TQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02509.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304357.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2P6RE481e-136A0A2P6RE48_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004304357.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-21B3 family protein