PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02557.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 215aa    MW: 22723.9 Da    PI: 7.9223
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02557.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.55e-292102196
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C++ Cvl+ ++     p++q  ++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++
  mrna02557.1-v1.0-hybrid   2 SCNGCRVLRKGCSETCVLRSCLrwidsPESQGYATLFLAKFFGRSDLLSFISAVPENQRPALFQSLLFEACGRTVNPVSGAVGILS 87 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelal 96 
                              ++++++++++++++l
  mrna02557.1-v1.0-hybrid  88 SGNWHVCHAAVQTVL 102
                              ********9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.8241107IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR SCLRWIDSPE SQGYATLFLA KFFGRSDLLS FISAVPENQR  60
PALFQSLLFE ACGRTVNPVS GAVGILSSGN WHVCHAAVQT VLSGGVLRPL PAMLTPNLDE  120
SSQVTINRGS CGIQNPRYTS VPSMFDDDVE PLDVGLSLKP NLAAAGGRGR ARGWSCAVDR  180
MRDTVSFSSE DSVMTTSGGG GGSDGGRKLL NLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02557.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290959.11e-155PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SZE82e-61LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A2P6Q0V71e-115A0A2P6Q0V7_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004290959.11e-155(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.19e-64LOB domain-containing protein 39