PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna02696.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 195aa MW: 21908.6 Da PI: 9.9604

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna02696.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.9	1.9e-29	6	105	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklq 84 +Ca+C++ r kC++dC lapyfpa+ ++kf+n+ ++FG+s ++kll++l +++r+ am+ ++ eA+ r+ dPv G+++v+++ mrna02696.1-v1.0-hybrid 6 KCASCRHSRTKCKQDCLLAPYFPAHMHQKFKNAYQVFGRSYITKLLHNLneTPQKRNVAMKNIIAEADSRIADPVGGSYRVVKQQC 91 5**********************************************766788**************************999 PP DUF260 85 qqleqlkaelallk 98 +l++l+ ++a+++ mrna02696.1-v1.0-hybrid 92 ADLSRLQWKVAQQE 105 99999988777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.26	5	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-27	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MKNYQKCASC RHSRTKCKQD CLLAPYFPAH MHQKFKNAYQ VFGRSYITKL LHNLNETPQK 60 RNVAMKNIIA EADSRIADPV GGSYRVVKQQ CADLSRLQWK VAQQELELQQ LRRQVNANVA 120 MAQPSLYQEQ GYQNLGEQIG NANQGQGNLL HQGEGNFVQG YGQRIRQEQA SIDAQSRAYV 180 HPPSPSSSTA SSRT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-17	7	108	12	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-17	7	108	12	111	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna02696.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292796.2	1e-144	PREDICTED: LOB domain-containing protein 7-like
TrEMBL	A0A2P6Q1C2	6e-61	A0A2P6Q1C2_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004292796.1	1e-117	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF32657	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	7e-24	LOB domain-containing protein 7

Link Out ? help Back to Top
Phytozome	mrna02696.1-v1.0-hybrid