PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03285.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 577aa    MW: 64192.2 Da    PI: 6.3838
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03285.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.11.3e-1332065751373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cAea+s++++   ++l+++ +  +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +   s++ l+++++++e
  mrna03285.1-v1.0-hybrid 206 LRKLLIACAEALSDNNMDGFEKLIEKARGAVSISGEPIQRLGAYMVEGLVARKEASGSNIYRALRCREPE---SDDLLSYMHILYE 288
                              689******************************************************************9...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+lkf++++aN aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rL+ + e
  mrna03285.1-v1.0-hybrid 289 ICPYLKFGYMAANGAIADACRNEDRIHIIDFQIAQGTQWVTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLEAVGRRLKAISE 374
                              ****************************************************************999999**************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++++p+ef+  v     d+++++L+v+p+EalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+++Fl+r
  mrna03285.1-v1.0-hybrid 375 KFNIPVEFHG-VPVFAPDVTPDMLDVRPDEALAVNFPLQLHHTPDESVDVNNPRDGLLRIVKSLSPKVTTLVEQESNTNTTPFLNR 459
                              **********.688899********************************************************************* PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f+e+l+yy a+f+s++++lpr+s++ri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ +++llr
  mrna03285.1-v1.0-hybrid 460 FIETLDYYLAMFESIDVTLPRNSKDRINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRSLLR 545
                              *************************************************************************************9 PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               ++ + y++ee++g+++lgWkdr+Lvs+SaW
  mrna03285.1-v1.0-hybrid 546 CYS-EHYKLEEKDGAMLLGWKDRNLVSASAW 575
                              999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.935180557IPR005202Transcription factor GRAS
PfamPF035144.4E-131206575IPR005202Transcription factor GRAS
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MDSHQHFGFS ATGAGLSFTS SHPTVPSIPN RLLGSLKFDI GNSPNSPFST HFDSDTVTTL  60
SDSQEQLSST ENLSGVSHSS NSPFETNSYI PRLSLSPSVD CRRDSLQLSS SRASLLQDAC  120
SPNIKHALQE LESALMGPDE EEVTTTNIFG ETSRRKGQRS LSWNQERQGA HVMQRQTSFV  180
SGHRQSEKRH KVLDEASPQG FPADNLRKLL IACAEALSDN NMDGFEKLIE KARGAVSISG  240
EPIQRLGAYM VEGLVARKEA SGSNIYRALR CREPESDDLL SYMHILYEIC PYLKFGYMAA  300
NGAIADACRN EDRIHIIDFQ IAQGTQWVTL LQALAARPSG APHVRITGID DPVSKYARGD  360
GLEAVGRRLK AISEKFNIPV EFHGVPVFAP DVTPDMLDVR PDEALAVNFP LQLHHTPDES  420
VDVNNPRDGL LRIVKSLSPK VTTLVEQESN TNTTPFLNRF IETLDYYLAM FESIDVTLPR  480
NSKDRINVEQ HCLARDIVNV IACEGKERVE RHELFGKWKS RLTMAGFRQY PLSSYVNSVI  540
RSLLRCYSEH YKLEEKDGAM LLGWKDRNLV SASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-612065765375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03285.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294325.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2P6QBM10.0A0A2P6QBM1_ROSCH; Putative transcription factor GRAS family
STRINGXP_004294325.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]