PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03411.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 548aa    MW: 59560.4 Da    PI: 6.7023
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03411.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.4e-30299357259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dg++WrKYGqK+ kg+++pr+YYrCt+  gCpv+k+v+r+aed++++++tYeg+Hnh+
  mrna03411.1-v1.0-hybrid 299 SDGCQWRKYGQKMAKGNPCPRAYYRCTMGtGCPVRKQVQRCAEDKTILTTTYEGHHNHP 357
                              7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-33283359IPR003657WRKY domain
SuperFamilySSF1182901.57E-27291359IPR003657WRKY domain
PROSITE profilePS5081129.207293359IPR003657WRKY domain
SMARTSM007741.3E-35298358IPR003657WRKY domain
PfamPF031065.3E-26300357IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MDLAASDHSI HNSRIEHVFS PATADGKRVV HDELDFFADH HKGSLKETDQ TLEDKEDMAQ  60
EKQLDTGLNL LTTYTSTSDK SSTDDGSTSH SMEDHKQTIN ELEVVQAELG RMNVDNQRLR  120
VMITQVNNNY KSLQVHLLEF MQRQQNQPVK QHKMVINGTA PEEKQIMNNI VPRQFMDMGR  180
AGNITHHEKN ELVSHSSLDM ARLSNNDCSG SPPIVESMDH FKSPVQRGSK RKSGGAEDSS  240
SEGQEFPAGS PGWVPKKIPK LSSGDVDVDH QAAASEETVS MIKKARVSVR ARSESSMISD  300
GCQWRKYGQK MAKGNPCPRA YYRCTMGTGC PVRKQVQRCA EDKTILTTTY EGHHNHPLPP  360
AAMTMVSTTS AAASMILSGS MPSADQHPHH AIINSSSNNF LQGTALHHPQ LPNCPPSFAT  420
LSASAPFPTV TLDLTRAPTT ASETMALNQL PNFSQNLPLP HVLGQALCNS ESKLTLLDGL  480
RGLDTTTNHS ILADKVSAAT AAITADPNFA AVLVAAITSI MGNNVHSNNN TNTSNNITTR  540
NSSDDNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21285361176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03411.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294408.10.0PREDICTED: probable WRKY transcription factor 31
TrEMBLA0A2P6QCL90.0A0A2P6QCL9_ROSCH; Putative transcription factor WRKY family
STRINGXP_004294408.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.18e-87WRKY family protein