PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03713.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 236aa    MW: 26607.7 Da    PI: 6.7973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03713.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72e-08124171455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++iN+++  L+ l+P +     k +  a +L  ++ Y++sLq
  mrna03713.1-v1.0-hybrid 124 SHSLAERVRREKINDRLRCLQNLVPGC----YKTMGMAVMLDVVISYVQSLQ 171
                              8*************************8....355888999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.41E-11118175No hitNo description
SuperFamilySSF474591.44E-16118189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-16120182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.173120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5124171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-8126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MELIDSLCEL ESLGANHHHE IMALSTHSLT RHHHHDQQQP QVPAAMNFST DHGPDIQRFS  60
TSRDQYDHHH VLIDQSTATE FGEQGEREKP LGGRKRKRTN TDKDMGKPKE VIHVRAKRGQ  120
ATDSHSLAER VRREKINDRL RCLQNLVPGC YKTMGMAVML DVVISYVQSL QNQIEFLSMK  180
LSAASAYYDF NSPGHADPVD TMQGTNAYEV QENMVRSEQG YGGGLPFSQS TQWPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03713.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299055.21e-179PREDICTED: transcription factor bHLH75 isoform X1
SwissprotA4D9982e-51BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A2P6R1L41e-128A0A2P6R1L4_ROSCH; Putative transcription factor bHLH family
STRINGXP_004299055.11e-178(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148131112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-53bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]