PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna03741.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 232aa MW: 24915.3 Da PI: 8.139

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna03741.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.1	5.8e-28	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a +++r+ +++sl+yeA+ r+ +P G+vg+++ mrna03741.1-v1.0-hybrid 4 SCNGCRVLRKGCSENCEIRPCIewiksPESQANATLFLAKFYGRAGLLNLINAGAQHQRPGIFKSLLYEACGRIVNPTFGSVGLLS 89 6*********************************************************************************** PP DUF260 82 klqqqleqlkaelall 97 ++++ +q++++++l+ mrna03741.1-v1.0-hybrid 90 SGNWAQCQAAVDAVLA 105 ********998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.85	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.5E-22	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MRTSCNGCRV LRKGCSENCE IRPCIEWIKS PESQANATLF LAKFYGRAGL LNLINAGAQH 60 QRPGIFKSLL YEACGRIVNP TFGSVGLLSS GNWAQCQAAV DAVLAGLPIV ENNEPVPYLN 120 PFPPVNSCDI RHVSKDTSLG KTRNRFKRSR SKVQLGSITE AAAEWGRVNP LEFGQCSSGG 180 GGERSMQSVE TVEAPWEMNQ GKPDPVGNGD EEEVGLELTL GFGFGKLKGK A*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna03741.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299077.1	1e-170	PREDICTED: LOB domain-containing protein 42
Swissprot	Q9CA30	1e-71	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A2P6R1Q0	1e-138	A0A2P6R1Q0_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004299077.1	1e-169	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	2e-70	LOB domain-containing protein 42

Link Out ? help Back to Top
Phytozome	mrna03741.1-v1.0-hybrid