PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03833.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 362aa    MW: 40588.4 Da    PI: 7.8109
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03833.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.5e-52151421128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              + pGfrFhPtdeelv +yLk+k++++ l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkat
  mrna03833.1-v1.0-hybrid  15 MLPGFRFHPTDEELVGFYLKRKIQQRLLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKAT 99 
                              579***************************.89***************9888999******************************* PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+d++++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  mrna03833.1-v1.0-hybrid 100 GTDRPIYSSeGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142
                              ********956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-5714173IPR003441NAC domain
PROSITE profilePS5100556.70415173IPR003441NAC domain
PfamPF023651.4E-2517142IPR003441NAC domain
PROSITE patternPS004850341347IPR006650Adenosine/AMP deaminase active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009168Biological Processpurine ribonucleoside monophosphate biosynthetic process
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0019239Molecular Functiondeaminase activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGEKNDQMDK VDDVMLPGFR FHPTDEELVG FYLKRKIQQR LLPIELIKQV DIYKYDPWDL  60
PKLASTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPSIADSSP PKKLLDKSLP PNDAWAICRI FKKTNSMAQR  180
ALSQSWLSPL PEPTSSGFLT QCPQFSSENN ISCTTDLGSA IQFWSNNNDL QHQQASTYSA  240
FALSNKPNFN PALVGENIPN GFMFTPIDMS SPPNFNHAFV GDLSNNNTSG SIDFDGSQQQ  300
QFSGFSTSLA QDQNQENTIT SLANNTNSHW GTIRSIGFPF SLGSDDPSDM STSYSTNKCY  360
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5411761171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03833.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024184957.10.0putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-103FEZ_ARATH; Protein FEZ
TrEMBLA0A2P6S4M60.0A0A2P6S4M6_ROSCH; Putative transcription factor NAM family
STRINGXP_004306150.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-99NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]