PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03956.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 735aa    MW: 80376.6 Da    PI: 5.7164
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03956.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.75.4e-1013757332374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              +++L+++Ae +++g+  laq +Larl+++ sp g+p+qR+a yf+eAL+  l++      ++ + s+ s    + ++aa+k fse+
  mrna03956.1-v1.0-hybrid 375 IDQLVNAAELIETGNPLLAQGILARLNHQLSPIGKPFQRAALYFKEALELLLNN----SHSSANLSPFS---LVYKIAAYKSFSEI 453
                              689**************************************************9....33344556665...899*********** PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeel 172
                              sP+l+f+++t+NqaIle+veg +rvH+iDfdi++G+QW++++q+ a R+ ++ppsl+iT+++ ++ +++ el  t+e+L++fA+el
  mrna03956.1-v1.0-hybrid 454 SPVLQFANFTCNQAILESVEGYNRVHVIDFDIGYGGQWASFMQEVALRNgGSPPSLKITAFVCSSVHDEFELAFTQENLKNFASEL 539
                              *************************************************66688*********9999******************* PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                              ++ fe +++  ++l+    + L ++  +++aV + l + ++l++++sl+     vL++vk+lsPk+vv  e+ +d+++ +F ++++
  mrna03956.1-v1.0-hybrid 540 NLAFELEIVSIEALN-SGSWPLPLHGSDSVAVAVNLPIGSFLNSPLSLPL----VLRFVKQLSPKIVVSLERGSDRTDIPFPHQII 620
                              ********7555444.45899************************99999....******************************** PP

                     GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                              +al+ ys+l++sl+a   ++ ++ +k+Er ll+++i+++v+ ++ +   +++   +Wr  + ++GF+p+++s+++++qa++l++++
  mrna03956.1-v1.0-hybrid 621 QALHSYSSLLESLDAV-NANLDALQKIERYLLQPSIEKIVMGRHLS--PKRTPTPSWRTLFLSSGFSPLTFSNFTESQAECLVQRT 703
                              *************887.5666999*****************99988..667779******************************** PP

                     GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              ++ g++ve+++ slvl+W+++ Lvs+SaWr
  mrna03956.1-v1.0-hybrid 704 PVGGFHVEKRQSSLVLCWQRKDLVSASAWR 733
                              *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.105348713IPR005202Transcription factor GRAS
PfamPF035141.9E-98375733IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MPLPFEEFQG KGVLDFSSAA SSSDLLGSLP PQGHHQQPQK WKENCYVGST EPTSVLDTRR  60
SPSPPTSSST LSSSHGSGGG SGSTDTTTTT GVAAAPVENK ASEAVGVEEA KCGPPLGMED  120
WESVLSESPG QEQSILRLIM SDIEDPSLGL NKLLQSGVGS HHDLGFNLGF EDQGYGAFEE  180
HNTGSLNMGM SSIVDPSLQA TSCSEIPFNG ANAGVFSASA NNLFPGALPP GLFQQQQQLV  240
EPVDEKPQIF NPQMVMNQNQ AQFNQNPAMF MPLTYSQLQD HHFLSPPPAK RHQSGGFGPS  300
YPAQRMPFLN PGQELLSRVQ QQQQQQHHQQ QQQLPMLPQH LQHRPVMLAT KDKMVNNLEG  360
DKELMNNHQF HQAIIDQLVN AAELIETGNP LLAQGILARL NHQLSPIGKP FQRAALYFKE  420
ALELLLNNSH SSANLSPFSL VYKIAAYKSF SEISPVLQFA NFTCNQAILE SVEGYNRVHV  480
IDFDIGYGGQ WASFMQEVAL RNGGSPPSLK ITAFVCSSVH DEFELAFTQE NLKNFASELN  540
LAFELEIVSI EALNSGSWPL PLHGSDSVAV AVNLPIGSFL NSPLSLPLVL RFVKQLSPKI  600
VVSLERGSDR TDIPFPHQII QALHSYSSLL ESLDAVNANL DALQKIERYL LQPSIEKIVM  660
GRHLSPKRTP TPSWRTLFLS SGFSPLTFSN FTESQAECLV QRTPVGGFHV EKRQSSLVLC  720
WQRKDLVSAS AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-313747334375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03956.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306953.10.0PREDICTED: scarecrow-like protein 6
TrEMBLA0A2P6SFR50.0A0A2P6SFR5_ROSCH; Putative transcription factor GRAS family
STRINGXP_004306953.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-145GRAS family protein