PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04187.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 220aa    MW: 25024.6 Da    PI: 5.8802
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04187.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.63.5e-1598148555
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                              +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L ++l+++++ 
  mrna04187.1-v1.0-hybrid  98 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHMSES 148
                              689***************************************777776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.1E-1494158IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.58896159IPR004827Basic-leucine zipper domain
PfamPF001704.1E-1398156IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.34E-1398147No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-1298171No hitNo description
CDDcd147021.27E-1899150No hitNo description
PROSITE patternPS000360101116IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MQPAEVTGLP YLVPSSSLSS PYSTQFSMMS TTTQSNPASA FPFNRFSATP LYNSYQFPSH  60
LVPQEVNNNN NPQQPSSFSS NSTSDEADEQ QLSLINERKQ RRMISNRESA RRSRMRKQKH  120
LDELWSQVVW LRNENHQLVD KLNHMSESHD RALQENAQLK EEVSELRELL SDLQLHSPNS  180
NYHPSLRDQL EVDVPCNTAY LRAESSNQPI TTSSMDLLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04187.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304176.11e-158PREDICTED: basic leucine zipper 43
SwissprotQ9FMC26e-40BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2P6S3I81e-136A0A2P6S3I8_ROSCH; Putative transcription factor bZIP family
STRINGXP_004304176.11e-158(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-47basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]