PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna04220.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 295aa MW: 32926.4 Da PI: 10.1024

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna04220.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82.7	3.9e-26	180	232	3	55
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r+ WtpeLH+rF++a++ LGG+e AtPk +++ m v+gLt+++vkSHLQk R+ mrna04220.1-v1.0-hybrid 180 RRIWTPELHSRFMKAINDLGGAEAATPKLVKDRMRVDGLTNDQVKSHLQKLRI 232 899***********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.137	175	235	IPR017930	Myb domain
SuperFamily	SSF46689	5.38E-14	176	234	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-23	177	234	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-21	180	232	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-6	183	231	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MASTSNIVDL KLTLSLKPSW VPKSINNLLI EIAQINNASA KLSKLETYLR KHEEEMRRIQ 60 TFDRDHNLPH CMLLLKDAIE VIHEQISIIK NGKVEADHHT APLIWKNRNQ PEKPSFPPSK 120 HDWVSMVRPS KWSKKEEPEG TSTNLRPNFN INVNDCSTAS TPIVNNHVSP LPIEISRNGR 180 RIWTPELHSR FMKAINDLGG AEAATPKLVK DRMRVDGLTN DQVKSHLQKL RIYKRAGLPI 240 RQAGAGSSSA DVDSFHQPAA AMASQGNSTL QSQVPYTRDF FGIISSTSPA HDSN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna04220.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467866.1	0.0	PREDICTED: transcription repressor KAN1-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14866	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	2e-28	G2-like family protein

Link Out ? help Back to Top
Phytozome	mrna04220.1-v1.0-hybrid