PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04816.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YC
Protein Properties Length: 195aa    MW: 21735.9 Da    PI: 10.7312
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04816.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC42.41.5e-1384176799
                    NF-YC   7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                              e+++++++d+k  ++P+ r+k+i++ d+   +is++a  l+ ka e f+ +++  +   +   ++++l    ++++v + + ++fl
  mrna04816.1-v1.0-hybrid  84 EEEVDEKEDVKSYTFPMERVKRIVREDDSDLRISSDAVFLINKATEKFLEKFSEDAHKCCVRDRKKALAYKHLSSVVGKMKRYEFL 169
                              5678999*********************99******************************************************** PP

                    NF-YC  93 vdivprd 99 
                               d vp++
  mrna04816.1-v1.0-hybrid 170 SDFVPEK 176
                              ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.08E-1882175IPR009072Histone-fold
PfamPF008087.7E-1797160IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.1E-2198175IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MATPKKATPP KKTKETKKPS TKISKPSSTQ KKEDNKTKKK TSNGTAAAAK SPSSKSQKSR  60
AQNGAKTTKP PTPKSKQNGK RVKEEEVDEK EDVKSYTFPM ERVKRIVRED DSDLRISSDA  120
VFLINKATEK FLEKFSEDAH KCCVRDRKKA LAYKHLSSVV GKMKRYEFLS DFVPEKIKAG  180
DALAKRKQVQ DGTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04816.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461702.11e-136PREDICTED: DNA polymerase epsilon subunit C
TrEMBLA0A2P6QHI53e-82A0A2P6QHI5_ROSCH; Putative transcription factor Hap3/NF-YB family
STRINGXP_008358413.14e-72(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.16e-32nuclear factor Y, subunit C10