PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04864.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 306aa    MW: 33470.5 Da    PI: 8.4006
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04864.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.34.6e-11180202123
                              ---SS-EEEEEEE--TT-SS-EE CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                              ldDgy+WrKYGqK+vk+s +pr+
  mrna04864.1-v1.0-hybrid 180 LDDGYKWRKYGQKVVKNSLHPRA 202
                              59*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-13165202IPR003657WRKY domain
SuperFamilySSF1182909.55E-10172202IPR003657WRKY domain
PROSITE profilePS5081113.104175216IPR003657WRKY domain
SMARTSM007741.1E-4180227IPR003657WRKY domain
PfamPF031062.7E-7181202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEGAHLRGVS SYDLHQQVSF SSSISPADQG IHHEMGFVQF EDHHHHHNQV LSFLAPSPAQ  60
QSHPPPPPPP PQQQSSSSHH HQTTAVNSCG ITVTTTAATN TNTGFSHSHD LVTKPSWNNN  120
DQAATLDPKG VSDETGTGNG SDCSNSWWRS SNSEKNKMKV RRKLREPRFC FQTRSEVDVL  180
DDGYKWRKYG QKVVKNSLHP RALSASFRVY GKGVMAPVAA QVTLCQKLRL GLVLGVVSFT  240
FDIGQFPWSY SASPLLGVFS CCRVVPIGEL LLDLHALDVS RGSADGALPG MAFDDRVIML  300
YSRRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164KVRRKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04864.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469209.11e-148PREDICTED: probable WRKY transcription factor 12
TrEMBLA0A2P6SFG73e-80A0A2P6SFG7_ROSCH; Putative transcription factor WRKY family
STRINGXP_004306977.11e-148(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72943245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.17e-31WRKY family protein