PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04888.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 191aa    MW: 21718 Da    PI: 4.1519
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04888.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.1e-101081801490
                              T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              ++ ++p++f+e+h  +   ++++++  ++g +  ++    k+ +++ +++GW + ++a +++ gD+++ +++g+++ 
  mrna04888.1-v1.0-hybrid 108 SIPTIPRPFFERHVVQ--FKTDIMVVGPDGTERVIRT--FKNNNSVRFGNGWGNLCSAYDIQPGDMLMMEVIGHKRY 180
                              5569*********644..5679***************..77778899***********************9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-6138IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-7140IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.109140IPR003340B3 DNA binding domain
SMARTSM010192.0E-4102188IPR003340B3 DNA binding domain
SuperFamilySSF1019361.45E-13108190IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-10110190IPR015300DNA-binding pseudobarrel domain
CDDcd100173.73E-7111173No hitNo description
PROSITE profilePS508638.501112188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MCFTRGWEQF RNYHQVRGGD FLVFTYEGGV SFEVDLLDME GVGRTEFEER NEQITDPDMV  60
EMSSDDEDDD IDEEASEHDT ERHDVEGEGD EEVEAANGMS CIMTVGNSIP TIPRPFFERH  120
VVQFKTDIMV VGPDGTERVI RTFKNNNSVR FGNGWGNLCS AYDIQPGDML MMEVIGHKRY  180
RLAITRPRAC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04888.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_004308495.11e-139(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3461622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.15e-06B3 family protein