PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04949.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19848.4 Da    PI: 10.6072
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04949.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.45e-151150342
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             i n+s r  tf kR++g++KK  EL +LC+++++ +i+s+
  mrna04949.1-v1.0-hybrid 11 ITNNSARRATFRKRKEGMMKKLRELTTLCGIDACAVIYSP 50
                             89************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.904149IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-22160IPR002100Transcription factor, MADS-box
CDDcd002663.03E-28285No hitNo description
PRINTSPR004041.1E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-24394IPR002100Transcription factor, MADS-box
PfamPF003193.9E-161150IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MARKKVRIAY ITNNSARRAT FRKRKEGMMK KLRELTTLCG IDACAVIYSP FDSQPEVWPS  60
PFGVKHVLEK FKNMSLIEKS QKMLNQESFL RELISKKQIQ LKKLRKENKE KQMRRVMFES  120
LTLGVPQFQH LNLMDMGVLQ QLIYQKLDEI DGKTKNLNEK VIDNENQTA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVRIAYITNNSARRATFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04949.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308515.11e-123PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A2P6SF331e-74A0A2P6SF33_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004308515.11e-122(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-40M-type_MADS family protein