PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna05436.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 128aa MW: 14402.9 Da PI: 9.6746

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna05436.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.7	4.1e-13	43	105	37	98
EEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 37 tledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 t+ + g+sWe+++ +k +++ l + Wk Fv++n+Lk+gD +vF+++ + ++ el+v+++r mrna05436.1-v1.0-hybrid 43 TVLNFAGKSWEMTC--GGKHRKHKLDkESWKAFVDDNKLKAGDGCVFEVMeCStTKLELRVQILR 105 577889******..888888777648******************76566688899999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	2.25E-9	28	105	No hit	No description
SuperFamily	SSF101936	3.92E-11	35	97	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.4E-10	43	105	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.207	43	107	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.8E-11	45	105	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MRRNQVFRGR QFKKQGPLKL YVDIQAGIPA KLHSILPPCS IPTVLNFAGK SWEMTCGGKH 60 RKHKLDKESW KAFVDDNKLK AGDGCVFEVM ECSTTKLELR VQILRGDIPA ELLEKERGDE 120 AEKPIVL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna05436.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303740.1	3e-69	PREDICTED: B3 domain-containing protein Os04g0386900-like
Refseq	XP_011467480.1	3e-69	PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A2P6RZ46	2e-56	A0A2P6RZ46_ROSCH; Putative transcription factor B3-Domain family
STRING	XP_004303740.1	1e-68	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	3e-07	B3 family protein

Link Out ? help Back to Top
Phytozome	mrna05436.1-v1.0-hybrid