PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05451.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 234aa    MW: 26247.9 Da    PI: 10.4448
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05451.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-183986249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             ++e  snr+vtfskR++g++ KA ELS L++ae a i++s +g+++ +
  mrna05451.1-v1.0-hybrid 39 KVEAASNRHVTFSKRKKGLFNKAAELSLLTGAETAAIVVSGNGRMFGF 86
                             67899***************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.2823090IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-253089IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-2331106IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-173252IPR002100Transcription factor, MADS-box
PfamPF003195.4E-184086IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-175267IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-176788IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAKTNNNNVL SSSVVELNNS NELPPVKKTK GRRRVEIKKV EAASNRHVTF SKRKKGLFNK  60
AAELSLLTGA ETAAIVVSGN GRMFGFGSSS CDAVIHRYLT ESNPQVALES DRRNKNVNIA  120
VNSAHLAKLR QQLLEARRQL EEEKKRATMI QQRKQEAGGA VPAKLWWEEE MMDQSPKELE  180
SYSEALHRLK SDVERRAQQK IMNLPCSYTS LMDGRVAIGE NYMNNNNSNM KNM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05451.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305781.11e-172PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P6RZ651e-130A0A2P6RZ65_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004305781.11e-171(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-21M-type_MADS family protein