PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05564.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23009 Da    PI: 6.5203
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05564.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.4e-201462250
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             +i+  s rqvtfskRr+g+  KA+  Sv Cda+vavi+fs+t klyey 
  mrna05564.1-v1.0-hybrid 14 KIQHLSSRQVTFSKRRKGLVNKAYDFSVRCDAKVAVIVFSNTKKLYEYF 62
                             6778899*****************************************6 PP
2K-box325.4e-1291151969
                    K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                                ++ + sl+  +a +++ei+ L     +l+G +L+ +sl+eL++Le+q+ ++++++ +kK
  mrna05564.1-v1.0-hybrid  91 EPSSSSDSLSAIAAVMQEEIKALNLDRSRLKGMELDGMSLRELHELEKQIREGIESVEKKK 151
                              556667888999999*********999*******************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-22564IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-18727IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-22872IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.175865IPR002100Transcription factor, MADS-box
PfamPF003191.2E-201461IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-182742IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-184263IPR002100Transcription factor, MADS-box
PfamPF014865.3E-795151IPR002487Transcription factor, K-box
PROSITE profilePS512977.03896203IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAMTTCPRRT KIEKIQHLSS RQVTFSKRRK GLVNKAYDFS VRCDAKVAVI VFSNTKKLYE  60
YFSSPSMERY MKERACGSVM ESAEKKSQHG EPSSSSDSLS AIAAVMQEEI KALNLDRSRL  120
KGMELDGMSL RELHELEKQI REGIESVEKK KIDERAVYML EDSDSDRVDG NYSNFFSGTS  180
SSAVSDCIES ELSEQFIDTC LHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05564.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289389.11e-148PREDICTED: agamous-like MADS-box protein AGL18
TrEMBLA0A2P6RPL23e-86A0A2P6RPL2_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004289389.11e-147(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.16e-26AGAMOUS-like 18