PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna05722.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 251aa MW: 27016.7 Da PI: 8.2674

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna05722.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.4	8.5e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg+++ mrna05722.1-v1.0-hybrid 2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPVLFQSLLFEACGRTVNPVNGAVGLLW 87 6*********************************************************************************** PP DUF260 82 klqqqleqlkaelall 97 ++++q++q+++e++l+ mrna05722.1-v1.0-hybrid 88 TGNWQVCQAAVETVLR 103 ********999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.052	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PVLFQSLLFE ACGRTVNPVN GAVGLLWTGN WQVCQAAVET VLRGGTLRPI PELVSGSGSG 120 LTPDEASEAD GTVCTDMWRL RDPTHNSGTS SRFTNSRSKT ASCSPTTKRK RPDGESLKAL 180 QHADLDLRLT PTLAFRPKPK PDTRRPGSPS MNSEESVVTT CFESNGFAEQ YPNPNGGVLG 240 SEIKLLNLFP *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna05722.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288234.1	0.0	PREDICTED: LOB domain-containing protein 38
Swissprot	Q9SN23	2e-91	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2P6RNZ9	1e-170	A0A2P6RNZ9_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004288234.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	7e-94	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	mrna05722.1-v1.0-hybrid