PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05767.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 167aa    MW: 19159.5 Da    PI: 7.7731
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05767.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-0867116247
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 
                              ++WT+eE+  l+ +v+ +G ++WktI +        ++R+   +k +w+ +
  mrna05767.1-v1.0-hybrid  67 QKWTAEEE-ALLAGVATHGVDNWKTILEDSEfgsilTRRSNMKLKYKWRHW 116
                              78999886.5678****************9999**9999999999999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-864118IPR009057Homeodomain-like
SuperFamilySSF466892.48E-1064123IPR009057Homeodomain-like
SMARTSM007170.002265119IPR001005SANT/Myb domain
CDDcd116607.90E-1167114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MATKAHLHRR RALQIYWIGD SILSNNLIGQ KRRHLDEHRT QFLTLTMVSI VNNVNIEVSA  60
VESQKPQKWT AEEEALLAGV ATHGVDNWKT ILEDSEFGSI LTRRSNMKLK YKWRHWSRRP  120
SVNSPSMADE ALEEAESVSD TKEEDRDSET KKRKRMPAED TEPSTC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05767.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024177942.15e-37single myb histone 4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3455222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.26e-14MYB_related family protein