PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna06165.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 262aa MW: 29397.7 Da PI: 5.0839

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna06165.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.5	1.9e-07	113	219	2	66
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........................................ 47 fY++Y+ +GFs rk+k k+ g +++r++v skeg+r+++ mrna06165.1-v1.0-hybrid 113 FYSFYSLAMGFSFRKEKLDKN-IYGIVVRRQLVYSKEGTRKKKGPPkdnpvshnlgsrtsfmksvgilekgkqrnshdmqaeeegg 197 ****************999.8899************9987665667777777777777777777777666666666666666 PP FAR1 48 ...tekerrtraetrtgCkakl 66 ++k ++r etr +C a+l mrna06165.1-v1.0-hybrid 198 npnKRKCPHSRRETRGDCLARL 219 5444444446666666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-4	113	221	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGWPLEAVSG SSTREALELA EESEGMGDGG SGGGENVAVE SGEKGSRNSR ILGENEEVQS 60 EEEDLEDEPE ETLVSNSVDT QNCLHYKGKW YEDLRYEDLK EVDFESVEEV DTFYSFYSLA 120 MGFSFRKEKL DKNIYGIVVR RQLVYSKEGT RKKKGPPKDN PVSHNLGSRT SFMKSVGILE 180 KGKQRNSHDM QAEEEGGNPN KRKCPHSRRE TRGDCLARLL LRDVIKPRVA PRVVNTSVGE 240 ASLCELKNLR KLAYLKRQID D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna06165.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19973	2	5

Link Out ? help Back to Top
Phytozome	mrna06165.1-v1.0-hybrid