PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06301.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 158aa    MW: 18275.1 Da    PI: 10.0529
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06301.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.81.7e-24953145
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             krien + rqvtfskRr+ ilKKA+ELSvLCd+eva+i+fs++ k
  mrna06301.1-v1.0-hybrid  9 KRIENPISRQVTFSKRRTSILKKAFELSVLCDTEVALIVFSPSSK 53
                             79***************************************9876 PP
2K-box43.71.2e-15891451268
                    K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 
                              + ++ ++ e + L++ ++nL+ ++++l G +L+ L ++eL+qLe+qL+++l++iRs+
  mrna06301.1-v1.0-hybrid  89 TMEQLWRYETEELRRLTQNLEMKLKNLAGAELSILGMQELKQLERQLKTGLERIRSR 145
                              45688999***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.034161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-29279IPR002100Transcription factor, MADS-box
CDDcd002651.18E-32278No hitNo description
PRINTSPR004041.1E-24323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-221054IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-243859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-1189146IPR002487Transcription factor, K-box
PROSITE profilePS512978.21691157IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MGRGKVELKR IENPISRQVT FSKRRTSILK KAFELSVLCD TEVALIVFSP SSKPDLYASH  60
DINRTIAMYR SQVGLHQSSN PACSTRITTM EQLWRYETEE LRRLTQNLEM KLKNLAGAEL  120
SILGMQELKQ LERQLKTGLE RIRSRMKFYD LANEDFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-19178178MEF2 CHIMERA
6byy_B7e-19178178MEF2 CHIMERA
6byy_C7e-19178178MEF2 CHIMERA
6byy_D7e-19178178MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06301.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297587.11e-104PREDICTED: MADS-box transcription factor 23-like isoform X3
RefseqXP_011463249.11e-104PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_011463250.11e-104PREDICTED: MADS-box transcription factor 23-like isoform X2
TrEMBLA0A498I4L63e-65A0A498I4L6_MALDO; Uncharacterized protein
STRINGXP_004297587.11e-103(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.25e-39MIKC_MADS family protein