PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07364.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 246aa    MW: 28110.7 Da    PI: 6.5282
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07364.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.74.2e-201659245
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             +i+++ +rqvtfskRr g++KKA+ELS+L +ae+avi+ s+  k
  mrna07364.1-v1.0-hybrid 16 KIQDDNKRQVTFSKRRSGLFKKASELSILSGAEIAVIVESPGRK 59
                             6999**********************************998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.249767IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-29766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-26893IPR002100Transcription factor, MADS-box
CDDcd002652.50E-34879No hitNo description
PRINTSPR004043.0E-17929IPR002100Transcription factor, MADS-box
PfamPF003191.1E-221663IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEVRTNKGRQ RIEIRKIQDD NKRQVTFSKR RSGLFKKASE LSILSGAEIA VIVESPGRKT  60
FSFGHPSVLT VLDRYENENP PIANNDNTEQ LMEVVRRRKM EDLMTELASI NEDLDMELIK  120
SQQLSQQETV RQAQHWYERF VDGMNDKEQL NFFRNTLREL RGKVAQHIEM LQQEQDEMTQ  180
QNTTILAASG PFGDFMQPSG VVARPLYRGE SSSHNTINLN DVMFPSPHLH PAGPLNPNLG  240
TPPFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-16898291MEF2 CHIMERA
6byy_B6e-16898291MEF2 CHIMERA
6byy_C6e-16898291MEF2 CHIMERA
6byy_D6e-16898291MEF2 CHIMERA
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07364.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292149.10.0PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P6PJD73e-81A0A2P6PJD7_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004292149.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-37AGAMOUS-like 62