PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna07458.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 149aa MW: 16324.8 Da PI: 5.1867

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna07458.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.1	2.1e-15	30	122	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+ +lt+s+v+ ++++++p k h + + +s+ ++ + gr+We++++ +k+s+ v + Wk Fv++n+Lk+gD +vF+l+ mrna07458.1-v1.0-hybrid 30 FDIILTKSHVNPKCQMSIPSKI---HPLLPSCSVPIV-LTFAGRTWEMTCNAaKKTSQVRVDSLSWKAFVDDNNLKVGDGCVFELM 111 77899************997...578888998887.567*****884555555777789*****************99 PP SSSEE..EEEE CS B3 86 grsefelvvkv 96 + s+++l+++v mrna07458.1-v1.0-hybrid 112 ECSSTKLMFRV 122 66777777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.92E-17	26	120	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.5E-15	26	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.34E-20	28	126	No hit	No description
SMART	SM01019	1.8E-4	30	128	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.983	30	128	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-13	30	122	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MGDPADQSSS NPATELRGDE FWPLSGKPFF DIILTKSHVN PKCQMSIPSK IHPLLPSCSV 60 PIVLTFAGRT WEMTCNAAKK TSQVRVDSLS WKAFVDDNNL KVGDGCVFEL MECSSTKLMF 120 RVQILRGDIP AELVDKYSGE DAANPFVI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna07458.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307182.1	1e-107	PREDICTED: B3 domain-containing protein Os04g0386900-like
Refseq	XP_011469454.1	1e-107	PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A2P6SDZ8	2e-73	A0A2P6SDZ8_ROSCH; Putative transcription factor B3-Domain family
STRING	XP_004307182.1	1e-107	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-11	B3 family protein

Link Out ? help Back to Top
Phytozome	mrna07458.1-v1.0-hybrid