PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07484.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 164aa    MW: 18398.6 Da    PI: 4.1476
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07484.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-0741632447
                             HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47
                             W++Ia +++ gRt++ +k++w++ 
  mrna07484.1-v1.0-hybrid 41 WSLIAGRLP-GRTDNVIKNYWYTC 63
                             *********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.61E-63971IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-103974IPR009057Homeodomain-like
CDDcd001674.77E-44162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAVKNAVQCG NVEDAIDKVN DLNLENALDR NLLNYTLSML WSLIAGRLPG RTDNVIKNYW  60
YTCLSKKIQQ KEKQSNNEAN GTIQFPVVDE KLSVADDDQK VHVEMKQECL AAAAGTSAAL  120
IKKEEVIDYE DYSNTYINNI DADEFLNLLN EEEPLSWEVP QIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07484.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468576.13e-78PREDICTED: transcription factor WER-like
TrEMBLA0A2P6S0C31e-60A0A2P6S0C3_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004305725.18e-73(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.12e-11myb domain protein 66