PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07522.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YA
Protein Properties Length: 260aa    MW: 28715.4 Da    PI: 10.1537
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07522.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.15.2e-32100156158
                CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              dep+YVNaKQy++Il+RRq Rakle+++kl  k rkpylheSRh hAl+R+RgsgGrF
  mrna07522.1-v1.0-hybrid 100 DEPIYVNAKQYRAILRRRQFRAKLEAQNKL-VKVRKPYLHESRHVHALKRARGSGGRF 156
                              79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.2E-3698159IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.85299159IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-26101156IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-23102124IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860104124IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.6E-23133156IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MASLKEGNPC GLGVVSGYNE IQGRLVGGHK KSLSSITSQE FVFPSQLDFS RSMAHVPFHR  60
AEPYYGGLIA AYGPQAMFHH PQMMGISPGR VPLPLDLTED EPIYVNAKQY RAILRRRQFR  120
AKLEAQNKLV KVRKPYLHES RHVHALKRAR GSGGRFLNMK KLQGSKPNST SHRVDVSGSA  180
QLHLTGNMSE PNVHEADNYR DGASTTSCSD ITSTSNSDDI FPRQDFRFSG YPSHMGGTLQ  240
VPLVDFHGGG NQQHVSIFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19100161263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07522.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467407.10.0PREDICTED: nuclear transcription factor Y subunit A-3
RefseqXP_011467408.10.0PREDICTED: nuclear transcription factor Y subunit A-3
SwissprotQ93ZH22e-67NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A2P6RYG51e-172A0A2P6RYG5_ROSCH; Putative transcription factor Hap2/NF-YA family
STRINGXP_004303671.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-60nuclear factor Y, subunit A3