PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07828.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family RAV
Protein Properties Length: 370aa    MW: 41777.7 Da    PI: 7.5368
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07828.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.8e-1364111255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ykGV + + +grW A+I+       +  r++lg+f++  +Aa a++ a+ kl++
  mrna07828.1-v1.0-hybrid  64 NYKGVVQQP-NGRWGAQIYA------NhNRVWLGTFDSDIKAAMAYDSAAIKLHN 111
                              69*******.8******999......44*************************97 PP
2B374.51.2e-23186282183
                              EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkan 72 
                              f+k+ltpsdv+k++rlv+pk++a+++             +++++ +++l+++de+    W+++++y+k+s+++v+t+GW++Fvk  
  mrna07828.1-v1.0-hybrid 186 FQKELTPSDVGKLNRLVIPKNYATKFfpridesmqggldENNPAPDVQLSFYDENMrGPWKFRYCYWKSSQSFVFTRGWNRFVKNS 271
                              99**********************************99988888999******888689*************************** PP

                              T--TT-EEEEE CS
                       B3  73 gLkegDfvvFk 83 
                              +Lk++D++ F+
  mrna07828.1-v1.0-hybrid 272 KLKANDTIRFY 282
                              **********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-2163121No hitNo description
SuperFamilySSF541711.11E-1464120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-1764119IPR001471AP2/ERF domain
SMARTSM003805.3E-1864125IPR001471AP2/ERF domain
PfamPF008478.7E-964111IPR001471AP2/ERF domain
PROSITE profilePS5103217.06964119IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.5E-30182288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-24184283IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-22185282No hitNo description
PROSITE profilePS5086311.491186306IPR003340B3 DNA binding domain
SMARTSM010192.7E-16186292IPR003340B3 DNA binding domain
PfamPF023627.4E-21186282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MALEMQEDLS STVSNAGTSA TTRSSKRRTY QAEASVSSIT AGFLVQERKR LSHGSSNQLS  60
ANTNYKGVVQ QPNGRWGAQI YANHNRVWLG TFDSDIKAAM AYDSAAIKLH NGECQRNFAW  120
TNTIIQERHF QNLYSQEAVL NMIKDGSYQA RFVEFLVACQ AAEVMSGSNS ARVQQSMRDI  180
FPKQLFQKEL TPSDVGKLNR LVIPKNYATK FFPRIDESMQ GGLDENNPAP DVQLSFYDEN  240
MRGPWKFRYC YWKSSQSFVF TRGWNRFVKN SKLKANDTIR FYECHIEEGD NKDPKSFYMI  300
KIDRAEDSDN VNIVENASQS VSPALTFLHA KKLGEEKDDI STQTAEVIDE IPQVNGDNQT  360
VKLFGVVIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-251832895101B3 domain-containing transcription factor NGA1
5os9_B3e-251832895101B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07828.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309936.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-80RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A3S8T9510.0A0A3S8T951_FRAAN; Transcription factor RAV2
STRINGXP_004309936.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.17e-83RAV family protein