PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08032.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family G2-like
Protein Properties Length: 233aa    MW: 26823 Da    PI: 7.9256
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08032.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like25.23.6e-08103154550
                  G2-like   5 rWtpeLHerFveaveqLGGse..kAtPktilelmkv....kgLtlehvkSHL 50 
                               Wt e H+r v+ v qLGG +  k+t  ++l+lm+     +gLt + +  HL
  mrna08032.1-v1.0-hybrid 103 SWTLEHHRRVVRSVIQLGGLNssKTTAEAVLKLMDEedrrQGLTAKMIEHHL 154
                              7******************643389*********962223699999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-698154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCFEVEGNR GGTMTPISEW KLEQHKQFLD TFILIGGDKE QVGVHTALKA ELLSLAGCSC  60
RTFFPDFDIT SLEILQRRSQ ALFSSDEVTL DSLYVAPKKM SSSWTLEHHR RVVRSVIQLG  120
GLNSSKTTAE AVLKLMDEED RRQGLTAKMI EHHLVGLYGL QKETQRLMAF CEKEKEQSFW  180
DLRYLVRKGL YYVLFTKIKE NPHLRQHLKL LKQVKKETLI CELLDLYDDQ KP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08032.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3447522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.32e-06G2-like family protein