PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08240.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 219aa    MW: 24609.7 Da    PI: 8.4849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08240.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000142547123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C++ F++   L  H+++H
  mrna08240.1-v1.0-hybrid 25 FTCSFCKREFRSAQALGGHMNVH 47
                             89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-62251No hitNo description
SMARTSM003550.00672547IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0532552IPR007087Zinc finger, C2H2
PfamPF139121.6E-62548IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDCVKLRFGR EEDLSDISPW TPKNFTCSFC KREFRSAQAL GGHMNVHRRD RARLRLLPPN  60
SVPSSSEYSP YPNPNPNPNP KSYFSPSPSS SSSLSGANKY LPHLVSPRST YVSTPSSGTL  120
DHENKKLMFN SGSHQHHAPP FLHPKTGLKR SSALDYEFGD QLNGFAGFAQ KHHLDDDFEV  180
VKKDEKHINM IREELDMGLL IKDPNKVDVD LELRLGHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-112047229superman protein
2l1o_A2e-112047229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08240.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU8309190.0GU830919.1 Fragaria virginiana subsp. virginiana Superman-like protein FRASUP1 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457986.11e-161PREDICTED: transcriptional regulator SUPERMAN
TrEMBLD5LGG91e-127D5LGG9_FRAVR; Superman-like protein FRASUP1
STRINGEMJ021292e-35(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1696368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.12e-14zinc finger protein 11