PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08241.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 211aa    MW: 23412.3 Da    PI: 5.2831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08241.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000243557123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C  C++ F++   L  H++ H
  mrna08241.1-v1.0-hybrid 35 YECVFCKRGFTTAQALGGHMNIH 57
                             99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-63361No hitNo description
Gene3DG3DSA:3.30.160.601.5E-43361IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4273562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MESQSSHRHH EEDSKSSSDE EAEDLNDDLG TGRSYECVFC KRGFTTAQAL GGHMNIHRKE  60
RAKPRPTSAP SSIASKAADE HVSDLMRSHR SLQSYPSPHF ATDPEVNVNY RTYIPAPMWI  120
VGQAHSDHEL CARNYPVRHH QNLFATDDDC RNWRSGSSLS LGIGPSADDD DDDEDHLGLD  180
HHKKEIERSN GACSSEGDGL DLELRLGHDP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08241.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292195.11e-155PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A2P6PVF71e-131A0A2P6PVF7_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004292195.11e-154(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-13C2H2 family protein