PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna08253.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 228aa MW: 24982.5 Da PI: 6.0036

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna08253.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.7	9.5e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrr+C+++C++apyf++e+ + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqq mrna08253.1-v1.0-hybrid 7 PCGACKFLRRRCVRGCIFAPYFCHENgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQ 92 7*********************9989****************************************************** PP DUF260 86 qleqlkaelallkee 100 q+ +l+a+la++k++ mrna08253.1-v1.0-hybrid 93 QVVNLQAQLASIKDQ 107 ********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.083	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-37	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MTGSGSPCGA CKFLRRRCVR GCIFAPYFCH ENGATHFAAI HKVFGASNVS KLLAHLPVSD 60 RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASIKDQAPQ SFVNGSEAVA 120 NPNQNCFPDL ENSSNSVPQV NSDYHINYGG TASYHENGIM SSNSIGSSNY DQNSGIRDEN 180 ASYGSFEEVS PPLQSSFNMQ MNNRQYWGHY DRDVDELQSM AFSYQHS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	3	101	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna08253.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289920.1	1e-170	PREDICTED: LOB domain-containing protein 29-like
Swissprot	Q9SLB6	1e-66	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	A0A2P6PVG0	1e-146	A0A2P6PVG0_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004289920.1	1e-169	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3571	33	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	2e-57	LBD family protein

Link Out ? help Back to Top
Phytozome	mrna08253.1-v1.0-hybrid

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]