PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna08472.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

SRS

Protein Properties

Length: 378aa MW: 41117.1 Da PI: 8.3548

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna08472.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	206.7	6.2e-64	163	302	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalss 88 sg+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerq+q +a+++++ ++++ + +kr+re+ ++ s+l++ mrna08472.1-v1.0-hybrid 163 SGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSALQQQQ-QQQQLQFPKRQREN-QAGGSSLAC 246 7899**********************************************999987766.55677788888886.778899999 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +l++++s evss+avfrcvrvs++dd +e++aYqtav+igGhvfkG+Lyd+Gl++ mrna08472.1-v1.0-hybrid 247 VRLPTNTSA----------EVSSPAVFRCVRVSAMDDVDEQYAYQTAVNIGGHVFKGLLYDHGLDN 302 999988754..........9*****************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.3E-62	165	301	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.5E-26	167	209	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.0E-25	255	300	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MVRKRSRSCG FSGAITDTWT YSDRSGLINR KKEPERPCVY VTELELANLG GGRDQGVRNK 60 QGGDDERGGN LNLFSYGNEE IYNNSKGGFE LWPQYHPHHP HHHHHQQQSL NYYAFGVDPS 120 RRSNHNNLEG NVSDDSSSGL RLTVMRQGSG TGGGGGSGTG LGSGGMNCQD CGNQAKKDCP 180 HLRCRTCCKS RGFQCQTHVK STWVPAAKRR ERQEQFSALQ QQQQQQQLQF PKRQRENQAG 240 GSSLACVRLP TNTSAEVSSP AVFRCVRVSA MDDVDEQYAY QTAVNIGGHV FKGLLYDHGL 300 DNANYTSATT VGESSSGGQQ DGGGGHHNNQ QQLNLITAPT STSANPPTAT LLDPTMVFPT 360 PLNAFVAGTQ YFPPPRS*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MVRKRSRSCG FSGAITDTWT YSDRSGLINR KKEPERPCVY VTELELANLG GGRDQGVRNK  60
QGGDDERGGN LNLFSYGNEE IYNNSKGGFE LWPQYHPHHP HHHHHQQQSL NYYAFGVDPS  120
RRSNHNNLEG NVSDDSSSGL RLTVMRQGSG TGGGGGSGTG LGSGGMNCQD CGNQAKKDCP  180
HLRCRTCCKS RGFQCQTHVK STWVPAAKRR ERQEQFSALQ QQQQQQQLQF PKRQRENQAG  240
GSSLACVRLP TNTSAEVSSP AVFRCVRVSA MDDVDEQYAY QTAVNIGGHV FKGLLYDHGL  300
DNANYTSATT VGESSSGGQQ DGGGGHHNNQ QQLNLITAPT STSANPPTAT LLDPTMVFPT  360
PLNAFVAGTQ YFPPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna08472.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011459133.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	2e-72	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A2P6PYY7	1e-151	A0A2P6PYY7_ROSCH; Putative transcription factor STY-LRP1 family
STRING	XP_004291405.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	1e-65	SHI-related sequence 7

Link Out ? help Back to Top
Phytozome	mrna08472.1-v1.0-hybrid

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]