PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna09082.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 222aa MW: 25295.1 Da PI: 10.4318

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna09082.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55	1.5e-17	123	208	1	94
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k +++s+v+ ++ lp +f++++ + +++ t+tl de+g+++ + ++++ l++GW++F+ a++L +gD +vF+l++ mrna09082.1-v1.0-hybrid 123 FVKPMLQSHVTGGFWMGLPLSFCRKYL-P-KRDATVTLVDEQGEQYPTVY--LENKKG--LSGGWRGFAIAHELVDGDALVFQLTR 202 89**********************5.3.3678************..555555..9********************987 PP SSEE..EE CS B3 87 rsefelvv 94 ++f+ v mrna09082.1-v1.0-hybrid 203 PTTFK--V 208 67764..3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.35E-24	117	212	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.1E-20	118	211	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.98E-26	121	212	No hit	No description
SMART	SM01019	3.6E-23	123	214	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.196	123	214	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-16	123	208	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MAKPNTSYEE TRKKRMEENR KRMEALNLPQ LAQAAFPKPS PMKRQKPRKV EKQIVVVRRS 60 ARVATQPTPV YREVEVKLPR SYGRVSKHRD FSNRVYADEH SRAEATEKAE AFESGLGSDY 120 PTFVKPMLQS HVTGGFWMGL PLSFCRKYLP KRDATVTLVD EQGEQYPTVY LENKKGLSGG 180 WRGFAIAHEL VDGDALVFQL TRPTTFKVII LNFVMSTRVD T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna09082.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011458940.1	1e-155	PREDICTED: B3 domain-containing protein At5g42700-like
Refseq	XP_011458941.1	1e-155	PREDICTED: B3 domain-containing protein At5g42700-like
Swissprot	Q69V36	3e-71	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A2P6Q0E6	1e-134	A0A2P6Q0E6_ROSCH; Putative transcription factor B3-Domain family
STRING	XP_004291119.1	1e-122	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-59	B3 family protein

Link Out ? help Back to Top
Phytozome	mrna09082.1-v1.0-hybrid

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]